interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF A NDT80-DNA COMPLEX (MSE MUTANT MA8T)
(NDT80 protein)
referenceLamoureux et al. Structure 14 555 2006
sourceSaccharomyces cerevisiae
experimentX-ray (resolution=1.80, R-factor=0.174)
structural superfamilyp53-like transcription factors;
sequence familyNDT80 / PhoG like DNAbinding family;
reference complex1mnn_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signaturePRRNRDR

Estimated binding specificities ?

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# IC=7.831 IC/col=0.979 n_of_columns=8 specificity:   
A |   8   0   0   1   0   8   0  11
C |   8   0   0   0   0  11  96   8
G |   8   0  96   8  96   8   0  69
T |  72  96   0  87   0  69   0   8
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updated Thu Sep 12 16:04:09 2024