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legend  pdf

structure nameCRYSTAL STRUCTURE OF TETRAMERIC RESTRICTION ENDONUCLEASE SFII BOUND TO COGNATE DNA.
referenceAggarwal et al.
experimentX-ray (resolution=2.40, R-factor=?)
multimeric complexes2ezv_AB
redundant complexes2f03_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureERQKSRERRY

Estimated binding specificities ?

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# IC=5.766 IC/col=0.961 n_of_columns=6 specificity:   
A |  13   0   0   0   0  54
C |  13   0   0  96  96  16
G |  16  96  96   0   0  13
T |  54   0   0   0   0  13
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Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: SFII
GGCCNNNNNGGCCPubMed2ezv_AB(3.32e-04)
GGCCNNNNPubMed2ezv_A(6.34e-03), 2f03_A(6.37e-03)
NGGCCPubMed2ezv_A(3.54e-04), 2ezv_AB(8.54e-03), 2f03_A(3.56e-04)
GGCCNPubMed2ezv_A(3.54e-04), 2ezv_AB(8.54e-03), 2f03_A(3.56e-04)
GCGGCCGCPubMed2ezv_A(6.34e-03), 2f03_A(6.37e-03)
GGGCCCPubMed2ezv_A(1.12e-03), 2f03_A(1.12e-03)
GGCCGCCTPubMed2ezv_A(6.34e-03), 2f03_A(6.37e-03)
GCCNNNNNGGCPubMed2ezv_AB(3.80e-03)

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updated Tue Dec 17 22:42:01 2024