2h8r_AB : 3D-footprint complex

structure name	HEPATOCYTE NUCLEAR FACTOR 1B BOUND TO DNA: MODY5 GENE PRODUCT
reference	Rha et al.
source	Homo sapiens
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
reference complex	2h8r_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2h8r_A interface=57,58,59,60,62,63,69,103,165,166,170,173, silkelqalnteeaaeqraevdrmlsedpwraakmikgymqqhnipqrevvdvtglNQSHlSQhlnkgTpmktqkraalytwyvrkqreilrqfnqtvmrrnRfkwgpasqqilyqaydrqknpskeerealveecnraeclqrgvspskahglgsnlvtevrvYNwfaNrrKeea > 2h8r_B interface=57,58,59,60,62,63,69,101,163,168,171, silkelqalnteeaaeqraevdrmlsedpwraakmikgymqqhnipqrevvdvtglNQSHlSQhlnkgTpmktqkraalytwyvrkqreilrqfnqmrrnRfkwgpasqqilyqaydrqknpskeerealveecnraeclqrgvspskahglgsnlvtevrvYnwfaNrrKeeafr
interface signature	NQSHSQTRYNNK/NQSHSQTRYNK

Estimated binding specificities ?

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# IC=16.931 IC/col=1.129 n_of_columns=15

specificity:

A |   0   0   0  96  96   0  48  96   0   0   0  96   0   8  56
C |   0   0   0   0   0   0  16   0   0   0  96   0  96  72   8
G |  96   0   0   0   0   0  16   0   0   0   0   0   0   8  16
T |   0  96  96   0   0  96  16   0  96  96   0   0   0   8  16

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updated Fri Dec 13 12:10:59 2024