| structure name | HEPATOCYTE NUCLEAR FACTOR 1B BOUND TO DNA: MODY5 GENE PRODUCT (Hepatocyte nuclear factor 1-beta) |
| reference | Rha et al. |
| source | Homo sapiens |
| experiment | X-ray (resolution=3.20, R-factor=0.226) |
| structural superfamily | lambda repressor-like DNA-binding domains;Homeodomain-like; |
| sequence family | Hepatocyte nuclear factor 1 HNF1, N termi; Homeobox domain; |
| multimeric complexes | 2h8r_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | NQSHSQTRYNK |
Estimated binding specificities ?
readout + contact |  |
A | 11 0 0 0 11 62 59 24 24 96 0 6 96 C | 11 0 0 0 11 12 11 24 24 0 0 3 0 G | 12 96 96 0 62 11 15 24 24 0 0 3 0 T | 62 0 0 96 12 11 11 24 24 0 96 84 0scan! |
Dendrogram of similar interfaces ?
matrix format----NTQASAHTSTQT------TTPG--RTYCNAATNAKG-- L +--------------------------1ic8_B ! ----------------------------RA--ITQTNAMG-- L +--5 +5zjt_E ! ! +-1 ----STQATT------RG----------RARCVTCTNAQTRC L ! +------------------------3 +1au7_A +-6 ! ----------------------------RT--ITQCNAACRG L ! ! +-6a8r_A ! ! ----------------------------RTFTYAQTNAATRG L +-7 +-----------------------------6ryd_F ! ! QT--STNTVTATSTQT--RTETTT------------------ L ! ! +---2r1j_L ! +-------------------------4 --AT--QAAT--SA---------------------------- +-8 ! +4z5h_A ! ! +---2 --STKCQAAT--SA---------------------------- L ! ! +3dnv_B +-9 ! QT--TTQAQGST--ECQT----KC--RA-------------- L ! ! +-----------------------------1per_L -10 ! ----------------------------RA--ITQCNAMC-- L ! +-----------------------------1b8i_A ! ----TTQA--LTSAET-------------------------- L +-----------------------------2o4a_A |
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updated Fri Sep 13 16:20:00 2024