2hot_AB : 3D-footprint complex

structure name	PHAGE SELECTED HOMEODOMAIN BOUND TO MODIFIED DNA
reference	Feldman et al. 'Acs 1 755 2006
source	Drosophila melanogaster
experiment	X-ray (resolution=2.19, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	2hos_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2hot_A interface=1,46,47, RtafsseqlarlkrefnenrylterrrqqlsselglneaqvkgwfKNmrakikkst > 2hot_B interface=49,50, krprtafsseqlarlkrefnenrylterrrqqlsselglneaqvkgwfKNmrakikks
interface signature	RKN/KN

Estimated binding specificities ?

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# IC=7.334 IC/col=0.733 n_of_columns=10

specificity:

A |   0  17  24  24   6   0  87   0   4  82
C |  96  56  24  24  21   0   1   0   4   4
G |   0  13  24  24  65  96   4   0   4   4
T |   0  10  24  24   4   0   4  96  84   6

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updated Mon Sep 9 15:11:02 2024