2hot_AB : 3D-footprint complex

structure name	PHAGE SELECTED HOMEODOMAIN BOUND TO MODIFIED DNA
reference	Feldman et al. 'Acs 1 755 2006
source	Drosophila melanogaster
experiment	X-ray (resolution=2.19, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	2hos_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2hot_A interface=1,46,47, RtafsseqlarlkrefnenrylterrrqqlsselglneaqvkgwfKNmrakikkst > 2hot_B interface=49,50, krprtafsseqlarlkrefnenrylterrrqqlsselglneaqvkgwfKNmrakikks
interface signature	RKN/KN

Estimated binding specificities ?

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# IC=7.283 IC/col=0.728 n_of_columns=10

specificity:

A |   0  16  24  24   4   0  87   0   4  83
C |  96  54  24  24  20   0   4   0   4   5
G |   0  12  24  24  64  96   0   0   5   4
T |   0  14  24  24   8   0   5  96  83   4

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updated Fri Dec 13 12:13:50 2024