2irf_IJKL : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.
reference	Taniguchi et al. 'EMBO 18 5028 1999
source	Mus musculus
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	2irf_L
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2irf_I interface=36,76,78,79,82,83, rmrmrpwleeqinsntipglkwlnkekkifqipwmHaarhgwdvekdaplfrnwaihtgkhqpgidkpdpktwkaNfRCamNSlpdieevkdrsikkgnnafrvyrmlp > 2irf_J interface=75,76,78,79,80,82,83, rmrmrpwleeqinsntipglkwlnkekkifqipwmhaarhgwdvekdaplfrnwaihtgkhqpgidkpdpktwkANfRCAmNSlpdieevkdrsikkgnnafrvyrmlp > 2irf_K interface=36,76,78,79,82,83, rmrmrpwleeqinsntipglkwlnkekkifqipwmHaarhgwdvekdaplfrnwaihtgkhqpgidkpdpktwkaNfRCamNSlpdieevkdrsikkgnnafrvyrmlp > 2irf_L interface=71,75,76,78,79,82,83, rmrmrpwleeqinsntipglkwlnkekkifqipwmhaarhgwdvekdaplfrnwaihtgkhqpgidkpdpKtwkANfRCamNSlpdieevkdrsikkgnnafrvyrmlp
interface signature	HNRCNS/ANRCANS/HNRCNS/KANRCNS

Estimated binding specificities ?

readout + contact

# IC=18.843 IC/col=0.819 n_of_columns=23

specificity:

A |   1  24  96  24   1   0   1  61  96  93   4  24   1  24  96  24   0   0   6  24  96  67   1
C |   7  24   0  24   1   0   1  13   0   1   1  24   1  24   0  24   0   0   1  24   0   7   1
G |  84  24   0  24  93   0  93  13   0   1  90  24  90  24   0  24  96   0  88  24   0  11  93
T |   4  24   0  24   1  96   1   9   0   1   1  24   4  24   0  24   0  96   1  24   0  11   1

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updated Fri Dec 13 12:16:20 2024