2irf_IJKL : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.
reference	Taniguchi et al. 'EMBO 18 5028 1999
source	Mus musculus
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	2irf_L
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2irf_I interface=36,76,78,79,82,83, rmrmrpwleeqinsntipglkwlnkekkifqipwmHaarhgwdvekdaplfrnwaihtgkhqpgidkpdpktwkaNfRCamNSlpdieevkdrsikkgnnafrvyrmlp > 2irf_J interface=75,76,78,79,80,82,83, rmrmrpwleeqinsntipglkwlnkekkifqipwmhaarhgwdvekdaplfrnwaihtgkhqpgidkpdpktwkANfRCAmNSlpdieevkdrsikkgnnafrvyrmlp > 2irf_K interface=36,76,78,79,82,83, rmrmrpwleeqinsntipglkwlnkekkifqipwmHaarhgwdvekdaplfrnwaihtgkhqpgidkpdpktwkaNfRCamNSlpdieevkdrsikkgnnafrvyrmlp > 2irf_L interface=71,75,76,78,79,82,83, rmrmrpwleeqinsntipglkwlnkekkifqipwmhaarhgwdvekdaplfrnwaihtgkhqpgidkpdpKtwkANfRCamNSlpdieevkdrsikkgnnafrvyrmlp
interface signature	HNRCNS/ANRCANS/HNRCNS/KANRCNS

Estimated binding specificities ?

readout + contact

# IC=18.458 IC/col=0.803 n_of_columns=23

specificity:

A |   4  24  96  24   2   0   2  77  96  89   2  24   2  24  96  24   0   0   6  24  96  70   2
C |   6  24   0  24   2   0   2   6   0   3   3  24   3  24   0  24   0   0   4  24   0   9   2
G |  84  24   0  24  90   0  90   9   0   2  89  24  89  24   0  24  96   0  84  24   0   6  90
T |   2  24   0  24   2  96   2   4   0   2   2  24   2  24   0  24   0  96   2  24   0  11   2

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updated Mon Sep 9 15:13:32 2024