structure name | CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX. (INTERFERON REGULATORY FACTOR 2) |
reference | Taniguchi et al. 'EMBO 18 5028 1999 |
source | Mus musculus |
experiment | X-ray (resolution=2.20, R-factor=0.202) |
structural superfamily | "Winged helix" DNA-binding domain; |
sequence family | Interferon regulatory factor transcription f; |
multimeric complexes | 2irf_GH 2irf_IJKL |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | HKANRCNS |
Estimated binding specificities ?
readout + contact |
A | 9 9 0 9 96 C | 11 9 0 11 0 G | 67 9 96 9 0 T | 9 69 0 67 0scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: IRF-2 | ||
GAAAGT | PubMed | 2irf_IJKL(1.04e-03) |
GAAAG | PubMed | 2irf_IJKL(7.85e-05) |
AAGTGA | PubMed | 2irf_GH(1.03e-02), 2irf_IJKL(1.03e-03) |
Dendrogram of similar interfaces ?
matrix formatECKTRGAT--RGHT--RA L +---4mhg_A +-------------------------1 --KTRG----RGYT---- L +-2 +---4bqa_A ! ! ----NASTRGHT--ST-- L --3 +-----------------------------2uzk_A ! ----NASTRTHT--ST-- L +-----------------------------3l2c_A |
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updated Fri Sep 13 16:24:30 2024