2nny_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE ETS1 DIMER DNA COMPLEX.
reference	Kachalova et al. 'Embo 27 2006 2008
source	Homo sapiens
experiment	X-ray (resolution=2.58, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4l18_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2nny_A interface=80,81,84,87,88, vrdradlnkdkpvipaaalagytgsgpiqlwqfllelltdkssqsfiswtgdgwefklsdpdevarrwgkrknkpkmnyEKlsRglRYyydkniihktagkryvyrfvsdlqsllgytpeelhamldvk > 2nny_B interface=80,81,84,87,88,102, vrdradlnkdkpvipaaalagytgsgpiqlwqfllelltdkssqsfiswtgdgwefklsdpdevarrwgkrknkpkmnyEKlsRglRYyydkniihktagkRyvyrfvsdlqsllgytpeelhamldvk
interface signature	EKRRY/EKRRYR

Estimated binding specificities ?

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# IC=12.252 IC/col=0.875 n_of_columns=14

specificity:

A |  86   0   0  91  73  11  24  24   4   6   0   0   0   2
C |   4   0   0   4   9   4  24  24  73   4   0  96  96   4
G |   4  96  96   0   4  77  24  24   9   4   0   0   0   4
T |   2   0   0   1  10   4  24  24  10  82  96   0   0  86

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updated Mon Sep 9 15:25:04 2024