2o19_B : 3D-footprint complex

structure name	STRUCTURE OF E. COLI TOPOISOMERSAE III IN COMPLEX WITH AN 8-BASE SINGLE STRANDED OLIGONUCLEOTIDE. FROZEN IN GLYCEROL AT PH 5.5 (DNA topoisomerase 3)
reference	Mondragon et al. J.Mol.Biol. 368 105 2007
source	Escherichia coli
experiment	X-ray (resolution=2.45, R-factor=0.214)
structural superfamily	Prokaryotic type I DNA topoisomerase;
sequence family	DNA topoisomerase; Toprim domain;
reference complex	2o5c_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2o19_B interface=44,50,51,61,78,165,169,170,174,178,185,192,317,330,526,527, mrlfiaekpslaraiadvlpkphrkgdgfiecgngqvvtwcigHlleqaQPdaydsryarWnladlpivpekwqlqpRpsvtkqlnvikrflheaseivhagdpdregqllvdevldylqlapekrqqvqrclindlnpqaveraidrlrsnsefvplcvsalaRaraDWlygInmtRaytilgRnagyqgVlsvgrvqtpvlglvvrrdeeienfvakdffevkahivtpaderftaiwqpseacepyqdeegrllhrplaehvvnrisgqpaivtsyndkresesaplpfslsalqieaakrfglsaqnvldicQklyethklitypRsdcrylpeehfagrhavmnaisvhapdllpqpvvdpdirnrcwddkkvdahhaiiptarssainlteneakvynliarqylmqfcpdavfrkcvieldiakgkfvakarflaeagwrtllgskerdeendgtplpvvakgdellcekgevverqtqpprhftdatllsamtgiarfvqdkdlkkilratdglgteATragiiellfkrgfltkkgryihstdagkalfhslpematrpdmtahwesvltqisekqcryqdfmqplvgtlyqlidqakrtpvrqfrgivapgsgaiahhhhh
interface signature	HQPWRRDWIRRVQRAT

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# IC=5.664 IC/col=0.708 n_of_columns=8

A |   0   0   0  24  52   9   9   7
C |  96   0  96  24  14  67  11   7
G |   0  96   0  24  14  11   9   7
T |   0   0   0  24  16   9  67  75

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updated Thu Sep 12 16:21:26 2024