interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF E. COLI TOPOISOMERASE III IN COMPLEX WITH AN 8-BASE SINGLE STRANDED OLIGONUCLEOTIDE. FROZEN IN GLUCOSE PH 5.5
(DNA topoisomerase 3)
referenceMondragon et al. J.Mol.Biol. 368 105 2007
sourceEscherichia coli
experimentX-ray (resolution=2.35, R-factor=0.209)
structural superfamilyProkaryotic type I DNA topoisomerase;
sequence familyDNA topoisomerase; Toprim domain;
redundant complexes2o19_B 2o54_A 2o59_A 2o5e_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureEKQPWDDWIRRVQRT

Estimated binding specificities ?

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# IC=5.546 IC/col=0.792 n_of_columns=7 specificity:   
A |   0   0   0  24  24   0  14
C |  96   0  96  24  24  96  14
G |   0  96   0  24  24   0  14
T |   0   0   0  24  24   0  54
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updated Tue Dec 17 22:58:24 2024