interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF E. COLI TOPOISOMERASE III IN COMPLEX WITH AN 8-BASE SINGLE STRANDED OLIGONUCLEOTIDE. FROZEN IN GLYCEROL PH 8.0
(DNA topoisomerase 3)
referenceMondragon et al. J.Mol.Biol. 368 105 2007
sourceEscherichia coli
experimentX-ray (resolution=2.50, R-factor=0.223)
structural superfamilyProkaryotic type I DNA topoisomerase;
sequence familyDNA topoisomerase; Toprim domain;
reference complex2o5c_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureQPWDWIRRVT

Estimated binding specificities ?

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# IC=4.048 IC/col=0.810 n_of_columns=5 specificity:   
A |   0   0   0  24  38
C |  96   0  96  24  19
G |   0  96   0  24  19
T |   0   0   0  24  20
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updated Mon Dec 16 19:53:13 2024