interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF E. COLI TOPOISOMERASE III IN COMPLEX WITH AN 8-BASE SINGLE STRANDED OLIGONUCLEOTIDE. FROZEN IN GLUCOSE PH 7.0
(DNA topoisomerase 3)
referenceMondragon et al. J.Mol.Biol. 368 105 2007
sourceEscherichia coli
experimentX-ray (resolution=2.50, R-factor=0.219)
structural superfamilyProkaryotic type I DNA topoisomerase;
sequence familyDNA topoisomerase; Toprim domain;
reference complex2o5c_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureEKQPWDDWIRRVQYRT

Estimated binding specificities ?

contactlogo
# IC=5.387 IC/col=0.770 n_of_columns=7 specificity:   
A |   0   0   0  24  24   0  19
C |  96   0  96  24  24  96  19
G |   0  96   0  24  24   0  19
T |   0   0   0  24  24   0  39
scan!

home
updated Thu Sep 12 16:21:48 2024