| structure name | NMR STRUCTURE OF THE SIGMA-54 RPON DOMAIN BOUND TO THE-24 PROMOTER ELEMENT (RNA POLYMERASE SIGMA FACTOR RPON) |
| source | AQUIFEX AEOLICUS |
| experiment | NMR |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Sigma54, DNA binding domain 124; |
| redundant complexes |  2o9l_A
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | DRRTK |
Estimated binding specificities ?
readout + contact |  |
A | 14 24 6 0 81 C | 13 24 6 96 4 G | 13 24 78 0 4 T | 56 24 6 0 7scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: SIGMA-54 | ||
| TACCA | PubMed | 2o9l_A(9.74e-03) |
Dendrogram of similar interfaces ?
matrix formatDT--RTRGTTKT---- L +----2o8k_A +------------1 ------RCQCQA---- +---2 +----4hdv_A ! ! --TT------HTRTVG L --3 +-----------------6ldm_A ! ----RCET--SAQAKT L +---------------------6qec_A |
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updated Fri Sep 13 16:33:42 2024