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structure nameAMBER REFINED NMR STRUCTURE OF THE SIGMA-54 RPON DOMAIN BOUND TO THE- 24 PROMOTER ELEMENT
(RNA POLYMERASE SIGMA FACTOR RPON)
sourceAQUIFEX AEOLICUS
experimentNMR
structural superfamily"Winged helix" DNA-binding domain;
sequence familySigma54, DNA binding domain 124;
redundant complexes2o8k
reference complex2o8k_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureDRRTKR

Estimated binding specificities ?

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# IC=6.633 IC/col=0.829 n_of_columns=8 specificity:   
A |   0   0   9   0  96  24  67  67
C |   0   0  67  96   0  24  11  11
G |   0  96  11   0   0  24   9   9
T |  96   0   9   0   0  24   9   9
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Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: SIGMA-54
TACCAPubMed2o9l_A(9.74e-03)

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updated Thu Sep 12 16:24:49 2024