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interface graphfootprint logointerface matrixatomic interactionsinterface residue numbers

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Mon Dec 18 07:06:15 2023

structure name	LAST STOP ON THE ROAD TO REPAIR: STRUCTURE OF E.COLI DNA LIGASE BOUND TO NICKED DNA-ADENYLATE (DNA ligase)
reference	Nandakumar et al. Mol.Cell 26 257 2007
source	Escherichia coli
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	DNA ligase/mRNA capping enzyme, catalytic domain;RuvA domain 2-like;Nucleic acid-binding proteins;
sequence family	NADdependent DNA ligase adenylation; NADdependent DNA ligase OBfold doma; NADdependent DNA ligase C4 zinc fing; Helixhairpinhelix motif;
reference complex	4glx_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2owo_A interface=200,201,208,359,379,383,384,487, mesieqqltelrttlrhheylyhvmdapeipdaeydrlmrelreletkhpelitpdsptqrvgaaplaafsqirhevpmlsldnvfdeesflafnkrvqdrlknnekvtwccelkldglavsilyengvlvsaatrgdgttgeditsnvrtiraiplklhgeniparlevrgevflpqagfekinedarrtggkvfanpRNaaagslRqldpritakrpltffcygvgvleggelpdthlgrllqfkkwglpvsdrvtlcesaeevlafyhkveedrptlgfdidgvvikvnslaqqeqlgfvaraprwavafkfpaqeqmtfvrdvefqvgrtgaitpvarlepvhvagvlvsnatlHnadeierlglrigdkvvirRagdVIpqvvnvvlserpedtrevvfpthcpvcgsdvervegeavarctgglicgaqrkeslkhfvsrramdvdgmgdkiidqlvekeyvhtpadlfkltagkltgleRmgpksaqnvvnalekakettfarflyalgirevgeataaglaayfgtlealeaasieelqkvpdvgivvashvhnffaeesnrnvisellaegvhwpap