2r5y_AB : 3D-footprint complex

structure name	STRUCTURE OF SCR/EXD COMPLEX BOUND TO A CONSENSUS HOX-EXD SITE
reference	Aggarwal et al. 'Cell(Cambridge,Mass.)' 131 530 2007
source	DROSOPHILA MELANOGASTER
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1puf_B 2r5y_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2r5y_A interface=17,59,62,63,66, gkknppqiypwmkrvqRtsytryqtlelekefhfnryltrrrrieiahalslterqikIwfQNrrMkwkkehk > 2r5y_B interface=1,46,50,53,54, RrnfskqaseilneyfyshlsnpypseeakeelarkcgitvsqvsNwfgNkrIRykkni
interface signature	RIQNM/RNNIR

Estimated binding specificities ?

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# IC=11.045 IC/col=1.104 n_of_columns=10

specificity:

A |   0   0  96   0   0   0  96  13  13   0
C |   0   0   0   0   0   0   0  27  13   0
G |   0  96   0   0   0   0   0  13  57  96
T |  96   0   0  96  96  96   0  43  13   0

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updated Mon Sep 9 16:01:07 2024