2rba_AB : 3D-footprint complex

structure name	STRUCTURE OF HUMAN THYMINE DNA GLYCOSYLASE BOUND TO ABASIC AND UNDAMAGED DNA
reference	Pozharski et al. Proc.Natl.Acad.Sci.Usa 105 8890 2008
source	Homo sapiens
experiment	X-ray (resolution=2.79, R-factor=?)
structural superfamily	Uracil-DNA glycosylase-like;
reference complex	4z47_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2rba_A interface=79,152,153,154,155,156,158, tlpdiltfnldiviiginpglmaaykghhypgpgnhfwkclfmsglsevqlnhmddhtlpgkygigftnmverttpgsKdlsskefreggrilvqklqkyqpriavfngkciyeifskevfgvkvknlefglqphkipdtetlcyvmpsssARCAQfPraqdkvhyyiklkdlrdqlkgier > 2rba_B interface=153,154,155, tlpdiltfnldiviiginpglmaaykghhypgpgnhfwkclfmsglsevqlnhmddhtlpgkygigftnmverttpgskdlsskefreggrilvqklqkyqpriavfngkciyeifskevfgvkvknlefglqphkipdtetlcyvmpsssaRCAqfpraqdkvhyyiklkdlrdqlkgier
interface signature	KARCAQP/RCA

Estimated binding specificities ?

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# IC=3.344 IC/col=0.334 n_of_columns=10

specificity:

A |  18  12  22  21  21  24  96  24   0  13
C |  42  12  22  31  23  24   0  24   0  13
G |  18  12  27  23  21  24   0  24  96  13
T |  18  60  25  21  31  24   0  24   0  57

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updated Mon Sep 9 16:02:41 2024