| structure name | TOPOISOMERASE IIA BOUND TO G-SEGMENT DNA (DNA topoisomerase 2) |
| reference | Berger et al. Nature 450 1201 2007 |
| source | Saccharomyces cerevisiae |
| experiment | X-ray (resolution=3.00, R-factor=0.231) |
| structural superfamily | Type II DNA topoisomerase; |
| sequence family | DNA gyrase/topoisomerase IV, subunit A; |
| reference complex | 3l4j_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RKDSIS |
Estimated binding specificities ?
| contact |  |
A | 0 0 24 18 10 C | 96 0 24 18 8 G | 0 96 24 18 70 T | 0 0 24 42 8scan! |
Dendrogram of similar interfaces ?
matrix formatRGKA--SG------------------------ICSG------------ L +-----------2rgr_A +------------4 ----RC------STSA--------------RGIC-------------- +---8 +-----------3k9f_B ! ! --KT-------------------------------------------- ! +------------------------3k9f_C ! ----------------NASTRGHT------KA---------------- L ! +-----2c6y_A +-9 +------3 ------------------NA--RA----LT------------------ L ! ! +----------5 +-----2a07_K ! ! ! ! --------DTRTRGTT--KT---------------------------- L ! ! ! +------------2o8k_A ! +----7 ------------RGRGYC------------------------------ L ! ! +---1cf7_A -10 ! +---------------2 ----------------------YG------------------------ ! +---6 +---2heo_D ! ! ------HT----------NC--STNARG-------------------- L ! +-------------------1k61_B ! ------------------------------------NCAAAT--RT-- L ! +--1a02_F +--------------------------1 --------------------------------------NCTTAT--RG L +--2dgc_A |
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updated Thu Sep 12 16:32:22 2024