| structure name | TOPOISOMERASE II-DNA CLEAVAGE COMPLEX, APO (DNA topoisomerase 2) |
| reference | Schmidt et al. Nature 465 641 2010 |
| source | Saccharomyces cerevisiae |
| experiment | X-ray (resolution=2.48, R-factor=0.240) |
| structural superfamily | Type II DNA topoisomerase; |
| sequence family | DNA gyrase/topoisomerase IV, subunit A; |
| redundant complexes |  2rgr_A
3l4k_A
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format--KT------------------SA--------------------EGIGSC-------------------------------- +-3l4j_A +-------------3 --KA--DC------------------------------------ECIGSG-------------------------------- L +-----8 +-4fm9_A ! ! RAKG----------------QAAG----------------------IGAG-------------------------------- L +--9 +---------------5zen_A ! ! --KT----RC------------AT----------------------IC------------RG-------------------- L ! +---------------------2xkk_C ! --KA------------------SA----------------RG----IG---------------------------------- ! +-2xcr_U +-10 +----2 RCKT------------------SA----------------RG----IG--QT------------------------------ L ! ! +-------4 +-5npk_d ! ! ! ! ----YT----------------ST------------------RA--IG---------------------------------- ! ! +-6 +------5bs8_A ! ! ! ! ----YC----------------SG----------------RT----IG---------------------------------- +-11 ! ! ! +5iwi_C ! ! +---------7 +--------------1 ------------------------------------------------------------------------------DAKG ! ! ! +6n1p_A ! ! ! --------RC------------ST----------------------IA---------------------------------- +-12 ! +--------------3ksb_B ! ! ! --KT------------------------------------------------------------------------------ ! ! +---------------------------5bs8_D +-13 ! --KG------------------------------------------------------------------------------ ! ! +----------------------------5iwi_D +-14 ! ----------QA------------------------------NG-------------------------------------- ! ! +----------------------------7k63_U +-15 ! --------------RC--------------------------SG-------------------------------------- ! ! +----------------------------7cow_T ! ! ----------------------------------------------------TAFCAGRC---------------------- L +-16 +----------------------------6dg0_A ! ! ----------------------------NA----RA--LT------------------------------------------ L ! ! +-----------2a07_J +-17 +-----------------5 ----------------DTRGRCTT----KT---------------------------------------------------- L ! ! +-----------2o9l_A +-18 ! ------------RC-------------------------------------------------------------------- ! ! +-----------------------------6l9z_S +-19 ! --------------------------KGSA----QAKT-------------------------------------------- L ! ! +-----------------------------7d3t_D +-20 ! --------------------------------------------------------------NCAT----STRA-------- ! ! +-----------------------------1a02_J +-21 ! --------------------------------------------------------------NCAAAT----RT-------- L ! ! +-----------------------------1a02_F +-22 ! ------------------------------------------------------------------NG--AT--STRG---- ! ! +-----------------------------5szx_B -23 ! ------------------------------------------------------------------NCTT--AT--RG---- L ! +-----------------------------2dgc_A ! ------------------------NAST--RTHT----LT------------------------------------------ L +-----------------------------4lg0_A |
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updated Fri Sep 13 17:23:38 2024