2vw9_AB : 3D-footprint complex

structure name	SINGLE STRANDED DNA BINDING PROTEIN COMPLEX FROM HELICOBACTER PYLORI
reference	Chan et al. J.Mol.Biol. 388 508 2009
source	HELICOBACTER PYLORI
experiment	X-ray (resolution=2.30, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2vw9_A interface=10,12,13,18,28,32,38,48,50,52,54,56,62,66,78,82,84,94,103,104,106,107, mfnkvimvgRlTRnvelKylpsgsaaaTiglAtsrrfKkqdgtlgeeVcFiDaRlFgrtaeIanqYlskgssvliegRltyEsWmdqtgkknsRhtitadslQFmDKk > 2vw9_B interface=10,12,18,20,26,28,32,44,48,50,54,56,62,66,78,82,84,94,103,104, mfnkvimvgRlTrnvelKyLpsgsaAaTiglAtsrrfkkqdgtLgeeVcFidaRlFgrtaeIanqYlskgssvliegRltyEsWmdqtgkknsRhtitadslQFm
interface signature	RTRKTAKVFDRFIYREWRQFDK/RTKLATALVFRFIYREWRQF

Estimated binding specificities ?

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# IC=24.993 IC/col=1.087 n_of_columns=23

specificity:

A |   9   0   0   0   0   0   0  24   0   0   7   7   0   0   0   0   0  24   0   0   7   0   0
C |   7   0   0   0   0   0   0  24   0   0   7   7   0   0   0   0   0  24   0   0   7   0   0
G |   7   0   0   0   0   0   0  24   0   0   9   7   0   0   0   0   0  24   0   0   7   0   0
T |  73  96  96  96  96  96  96  24  96  96  73  75  96  96  96  96  96  24  96  96  75  96  96

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updated Fri Dec 13 13:12:31 2024