2vw9_A : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	SINGLE STRANDED DNA BINDING PROTEIN COMPLEX FROM HELICOBACTER PYLORI (SINGLE-STRANDED DNA BINDING PROTEIN)
reference	Chan et al. J.Mol.Biol. 388 508 2009
source	HELICOBACTER PYLORI
experiment	X-ray (resolution=2.30, R-factor=0.238)
structural superfamily	Nucleic acid-binding proteins;
sequence family	Singlestrand binding protein family;
multimeric complexes	2vw9_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2vw9_A interface=10,12,13,18,28,32,38,48,50,52,54,56,62,66,78,82,84,94,103,104,106,107, mfnkvimvgRlTRnvelKylpsgsaaaTiglAtsrrfKkqdgtlgeeVcFiDaRlFgrtaeIanqYlskgssvliegRltyEsWmdqtgkknsRhtitadslQFmDKk

  
  ----NT--DT--------STATNT--QTTTWT----------------------------------------   L                            +----5odn_B    
                                                                                 +------------------------2 
  --KTNT------------TTAT------TTWTRT----RTITYTET------RT--WTYTTT--NTMTQTLT   L   !                        ! +---6irq_A    
                                                                               --3                        +-1 
  ----RTTTKT--------TT----TTFTATFTNT--------------------------------------   L   !                          +---6bhx_B    
                                                                                 ! 
  NT--------RTMTVTET--------------RTSTLT--------TTETYTRTQT------KT--------       +-----------------------------3udg_C

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updated Fri Sep 13 16:43:41 2024