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legend  pdf

structure nameMOLECULAR BASIS OF ENGINEERED MEGANUCLEASE TARGETING OF THE ENDOGENOUS HUMAN RAG1 LOCUS
(I-CREI V2V3 VARIANT)
referenceChion-Sotine et al. 'Nucleic 39 729 2011
sourceCHLAMYDOMONAS REINHARDTII
experimentX-ray (resolution=2.31, R-factor=0.215)
structural superfamilyHoming endonucleases;
sequence familyLAGLIDADG endonuclease;
multimeric complexes2xe0_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSIQKRSNQSATYSVDRSKT

Estimated binding specificities ?

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# IC=10.856 IC/col=0.905 n_of_columns=12 specificity:   
A |   0   0  10  24   0   2   0  93   5  10   2  90
C |   0  21  12  24  96   2  96   0  18   2   2   2
G |   0  75  10  24   0   2   0   1  66  82   2   2
T |  96   0  64  24   0  90   0   2   7   2  90   2
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Dendrogram of similar interfaces ?

matrix format

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updated Sun Aug 3 06:37:39 2025