2xkk_AC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MOXIFLOXACIN, DNA, AND A. BAUMANNII TOPO IV (PARE-PARC FUSION TRUNCATE)
reference	Shillings et al. Nat.Struct.Mol.Biol. 17 1152 2010
source	ACINETOBACTER BAUMANNII
experiment	X-ray (resolution=3.25, R-factor=?)
structural superfamily	Type II DNA topoisomerase;
reference complex	2xkk_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2xkk_A interface=42,202,290,381,535, alpgkltreeselfivegdsaggsakqardknfqaimpirgKilntwevssdevlasqevhdiaiaigvdpgsddlselrygkiciladadsdglhiatllcalfvkhfpalveeghlyvampplfridigkdvhyalddeeletilknvknpqitrfkglgemnaiqlrettmdpntrrlvqldlddahltaglldkllaKkraadrkqwleqkenrsvaefteqaylnyamyvimdralphisdglkpvqrrivyamselglkssgkpkksartvgdvlgkyhphgdSacyeamvlmaqpfsyrypliegqgnwgspddpksfaamrteaklsayselllselgqgtsewqdnfdgslkepitlparvpnillngttgIavgmatdipphnlrevvkgtialirnpqtsdeklaeyipapdlptkaeiitppeellkiqttgrgsyrmravytiekneivitelpyqvsgskvitqiadqmqakklplvvdvrdesdhenptrlvivlrsnridaeavmshlfattdlessyRvnlnmigedgrpqvksirrillewieirkktvtrrlqyhlnriekrlhilaglliayldidtviriireedqpkpvlmehfnideiqaeailelklrhlakleemeirheqdelsakaaiireqlenpeslknliiselkedakkfgderrspiva > 2xkk_C interface=57,257,309,399,553, erkkivsgpalpgkladcvgqtreeselfivegdsaggsakqardknfqaimpirgKilntwevssdevlasqevhdiaiaigvdpgsddlselrygkiciladadsdglhiatllcalfvkhfpalveeghlyvampplfridigkdvhyalddeeletilknvknpqitrfkglgemnaiqlrettmdpntrrlvqldlddahltaglldkllakkraadrkqwleqkgatenrsvaefteqaylnyamyvimdRalphisdglkpvqrrivyamselglkssgkpkksartvgdvlgkyhphgdsAcyeamvlmaqpfsyrypliegqgnwgspddpksfaamrteaklsayselllselgqgtsewqdnfdgslkepitlparvpnillngttgIavgmatdipphnlrevvkgtialirnpqtsdeklaeyipapdlptkaeiitppeellkiqttgrgsyrmravytiekneivitelpyqvsgskvitqiadqmqakklplvvdvrdesdhenptrlvivlrsnridaeavmshlfattdlessyRvnlnmigedgrpqvksirrillewieirkktvtrrlqyhlnriekrlhilaglliayldidtviriireedqpkpvlmehfnideiqaeailelklrhlakleemeirheqdelsakaaiireqlenpeslknliiselkedakkfgderrspivar
interface signature	KKSIR/KRAIR

Estimated binding specificities ?

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# IC=13.750 IC/col=0.764 n_of_columns=18

specificity:

A |   6   0   0   0   5  80   6  24  24  24  24  80   5  24   0  96   0   0
C |  80   0   0   0  80   6   5  24  24  24  24   6   5  24  96   0   0   0
G |   5  96   0  96   6   5   5  24  24  24  24   5   6  24   0   0   0  96
T |   5   0  96   0   5   5  80  24  24  24  24   5  80  24   0   0  96   0

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updated Fri Dec 15 13:02:23 2023