2xro_ABEF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TTGV IN COMPLEX WITH ITS DNA OPERATOR
reference	Gallegos et al. 'Genes 24 2556 2010
source	PSEUDOMONAS PUTIDA
experiment	X-ray (resolution=3.40, R-factor=?)
structural superfamily	GAF domain-like;"Winged helix" DNA-binding domain;
reference complex	2xro_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2xro_A interface=22,34,35,37,38, qviaraasimralgshphglsLaaiaqlvglprSTvQRiinaleeeflvealgpaggfrlgpalgqlinqaqtdilslvkpylrslaeeldesvslaslagdkiyvldrivserelrvvfpiginvpaaataagkvllaalpdetlqaalgeqlpvltsntlgrkalvkqlsevrqsgvasdldehidgvssfatlldtylgyyslaivmpssraskqsdlikkallqsklnieraigr > 2xro_B interface=23,35,36,38,39, iqviaraasimralgshphglsLaaiaqlvglprSTvQRiinaleeeflvealgpaggfrlgpalgqlinqaqtdilslvkpylrslaeeldesvslaslagdkiyvldrivserelrvvfpiginvpaaataagkvllaalpdetlqaalgeqlpvltsntlgrkalvkqlsevrqsgvasdldehidgvssfatlldtylgyyslaivmpssraskqsdlikkallqsklnieraigr > 2xro_E interface=22,33,34,35,37,38, qviaraasimralgshphglsLaaiaqlvglpRSTvQRiinaleeeflvealgpaggfrlgpalgqlinqaqtdilslvkpylrslaeeldesvslaslagdkiyvldrivserelrvvfpiginvpaaataagkvllaalpdetlqaalgeqlpvltsntlgrkalvkqlsevrqsgvasdldehidgvssfatlldtylgyyslaivmpssraskqsdlikkallqsklnieraigr > 2xro_F interface=23,35,36,38,39, iqviaraasimralgshphglsLaaiaqlvglprSTvQRiinaleeeflvealgpaggfrlgpalgqlinqaqtdilslvkpylrslaeeldesvslaslagdkiyvldrivserelrvvfpiginvpaaataagkvllaalpdetlqaalgeqlpvltsntlgrkalvkqlsevrqsgvasdldehidgvssfatlldtylgyyslaivmpssraskqsdlikkallqsklnieraigr
interface signature	LSTQR/LSTQR/LRSTQR/LSTQR

Estimated binding specificities ?

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# IC=19.959 IC/col=0.570 n_of_columns=35

specificity:

A |   0  24   7   0  96  24  24  24  24  24   0   0   6   7  96  24  24  24  24  24   0  75   3   0   0  24  24  24  24  24   0   0  84  24   3
C |   0  24   7  96   0  24  24  24  24  24   0   0  84   7   0  24  24  24  24  24   0   7  84  96   0  24  24  24  24  24  96   0   3  24   2
G |   0  24  11   0   0  24  24  24  24  24   0  96   3   7   0  24  24  24  24  24   0   7   6   0  96  24  24  24  24  24   0  96   6  24   3
T |  96  24  71   0   0  24  24  24  24  24  96   0   3  75   0  24  24  24  24  24  96   7   3   0   0  24  24  24  24  24   0   0   3  24  88

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updated Mon Sep 9 16:11:49 2024