structure name | CRYSTAL STRUCTURE OF TTGV IN COMPLEX WITH ITS DNA OPERATOR (HTH-TYPE TRANSCRIPTIONAL REGULATOR TTGV) |
reference | Gallegos et al. 'Genes 24 2556 2010 |
source | PSEUDOMONAS PUTIDA |
experiment | X-ray (resolution=3.40, R-factor=0.217) |
structural superfamily | GAF domain-like;"Winged helix" DNA-binding domain; |
sequence family | IclR helixturnhelix domain; Bacterial transcriptional regulator; |
multimeric complexes | 2xro_ABEF |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | LRSTQR |
Estimated binding specificities ?
contact |
A | 0 54 13 0 0 C | 0 16 54 96 0 G | 0 13 16 0 96 T | 96 13 13 0 0scan! |
Dendrogram of similar interfaces ?
matrix formatLT----RTSGTG--QTRG------------------ L +--------------------2xro_E +---5 ----------------RCYG----KT---------- ! ! +2acj_B ! +--------------------1 --------TTHT----KG--------RC-------- L ! +7b0c_A +---7 ------------------YGRG-------------- ! ! +-4wcg_A ! ! +--------------2 ETNTSCRGHC----RT----------QA-------- ! ! +----4 +-5d4s_B ! ! ! ! RC---------------------------------- +-8 +--6 +----------------7cow_T ! ! ! ----SGRGPT----SGRG------------------ L ! ! +---------------------7bhy_A ! ! ----QTPTPG--TTRG--------------HT---- L --9 ! +-------5xxp_A ! +--------------------3 ----NTHG--RT--YTPT----------RT------ L ! +-------6qil_A ! ----------------IA----QC--------YART L +----------------------------1nk2_P |
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updated Fri Sep 13 16:48:57 2024