2yvh_AC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE OPERATOR-BINDING FORM OF THE MULTI-DRUG BINDING TRANSCRIPTIONAL REPRESSOR CGMR
reference	Shirakihara et al. J.Mol.Biol. 403 174 2010
source	Corynebacterium glutamicum
experiment	X-ray (resolution=2.50, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2yvh_A interface=34,35,36,39,40, skkemilrtaidyigeysletlsydslaeatglSKSglIYhfpsrhalllgmhelladdwdkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqwipdtddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelip > 2yvh_C interface=34,35,36,39,40, skkemilrtaidyigeysletlsydslaeatglSKSglIYhfpsrhalllgmhelladdwdkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqwipdtddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelip
interface signature	SKSIY/SKSIY

Estimated binding specificities ?

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# IC=9.775 IC/col=0.815 n_of_columns=12

specificity:

A |   0   5  24  91   0   0   1  11   0   7  24   5
C |  84   1  24   5  96   0   0  11  90  11  24   7
G |   5  90  24   0   0  96  11   0   1  73  24   5
T |   7   0  24   0   0   0  84  74   5   5  24  79

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updated Fri Dec 13 13:21:41 2024