2yvh_AC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE OPERATOR-BINDING FORM OF THE MULTI-DRUG BINDING TRANSCRIPTIONAL REPRESSOR CGMR
reference	Shirakihara et al. J.Mol.Biol. 403 174 2010
source	Corynebacterium glutamicum
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	2yvh_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2yvh_A interface=34,35,36,39,40, skkemilrtaidyigeysletlsydslaeatglSKSglIYhfpsrhalllgmhelladdwdkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqwipdtddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelip > 2yvh_C interface=34,35,36,39,40, skkemilrtaidyigeysletlsydslaeatglSKSglIYhfpsrhalllgmhelladdwdkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqwipdtddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelip
interface signature	SKSIY/SKSIY

Estimated binding specificities ?

readout + contact

# IC=9.788 IC/col=0.816 n_of_columns=12

specificity:

A |   5   5  24  90   0   0   0  12   0   5  24   5
C |  84   0  24   5  96   0   0  11  90  11  24   5
G |   0  90  24   0   0  96  12   0   1  73  24   5
T |   7   1  24   1   0   0  84  73   5   7  24  81

scan!

home
updated Mon Jan 5 02:02:05 2026