2yvh_AC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE OPERATOR-BINDING FORM OF THE MULTI-DRUG BINDING TRANSCRIPTIONAL REPRESSOR CGMR
reference	Shirakihara et al. J.Mol.Biol. 403 174 2010
source	Corynebacterium glutamicum
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	2yvh_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2yvh_A interface=34,35,36,39,40, skkemilrtaidyigeysletlsydslaeatglSKSglIYhfpsrhalllgmhelladdwdkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqwipdtddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelip > 2yvh_C interface=34,35,36,39,40, skkemilrtaidyigeysletlsydslaeatglSKSglIYhfpsrhalllgmhelladdwdkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqwipdtddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelip
interface signature	SKSIY/SKSIY

Estimated binding specificities ?

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# IC=10.934 IC/col=0.911 n_of_columns=12

specificity:

A |  88   9   4   0  59  77   0   0   1  24   0   0
C |   4  59  82   0   9  19  96   0   0  24  96   0
G |   0  18   4  96   9   0   0  96   9  24   0  96
T |   4  10   6   0  19   0   0   0  86  24   0   0

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updated Wed Jun 24 14:00:03 2026