interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF THE REPLICATING COMPLEX OF A POL ALPHA FAMILY DNA POLYMERASE, TERNARY COMPLEX 2
(DNA polymerase)
referenceKonigsberg et al.
sourceBACTERIOPHAGE RB69
experimentX-ray (resolution=2.40, R-factor=0.196)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family B, exonuclease do;
reference complex3qex_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signaturePYNKKK

Estimated binding specificities ?

contactlogo
# IC=2.663 IC/col=0.333 n_of_columns=8 specificity:   
A |   0  73  24  24  24  24  22   7
C |   0   9  24  24  24  24   9   9
G |   0   7  24  24  24  24  51   7
T |  96   7  24  24  24  24  14  73
scan!

home
updated Thu Jan 8 21:17:59 2026