3qex_A : 3D-footprint complex

structure name	RB69 DNA POLYMERASE (L561A/S565G/Y567A) TERNARY COMPLEX WITH DGTP OPPOSITE DT (DNA polymerase)
reference	Konigsberg et al. 'To ? ? ?
source	Enterobacteria phage RB69
experiment	X-ray (resolution=1.73, R-factor=0.180)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
sequence family	DNA polymerase family B, exonuclease do;
redundant complexes	1clq_A 1ig9_A 1q9x_D 1q9y_A 2dy4_A 2oyq_A 2ozm_A 2ozs_A 2p5g_D 2p5o_C 3cfp_A 3cfr_A 3cq8_A 3kd1_E 3kd5_E 3l8b_B 3lds_A 3lzi_A 3lzj_A 3nae_A 3nci_A 3ndk_A 3ne6_A 3ngi_A 3nhg_A 3qei_A 3qep_A 3qer_A 3qes_A 3qet_A 3qev_A 3qew_A 3qnn_A 3qno_A 3rma_D 3rmb_B 3rmc_A 3rmd_C 3rwu_A 3s9h_A 3scx_A 3si6_A 3sjj_A 3snn_A 3spy_A 3spz_A 3sq0_A 3sq1_A 3sq2_A 3sq4_A 3sun_A 3suo_A 3sup_A 3suq_A 3tab_C 3tae_A 3taf_B 3tag_B 3uiq_A 4dtj_A 4dtm_A 4dtn_A 4dto_A 4dtp_A 4dtr_A 4dts_A 4dtu_A 4dtx_A 4du1_A 4du3_A 4du4_A 4e3s_A 4fj5_A 4fj7_A 4fj8_A 4fj9_A 4fjg_A 4fjh_A 4fji_A 4fjj_A 4fjk_A 4fjl_A 4fjm_A 4fjn_A 4fjx_A 4fk0_A 4fk2_A 4fk4_A 4i9q_A 4j2a_A 4j2b_A 4j2d_A 4j2e_A 4khn_A 4khq_A 4khs_A 4khu_A 4khw_A 4khy_A 4ki4_A 4ki6_A 4m3r_A 4m3t_A 4m3u_A 4m3w_A 4m3x_A 4m3y_A 4m3z_A 4m41_A 4m42_A 4m45_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3qex_A interface=706,734, mkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrklfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtspdgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggdevpseiidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifgestakrlsphrktrvkvienmygsreiitlfgisvldyidlykkfsftnqpsysldyisefelnvgklkydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqsvfspiktwdaiifnslkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmtaqinrkalinglagalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkKryalnvwdmegtryaepklkimgletqKsstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvggfpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmf

No structural evidence for specific binding to DNA (<4 informative columns)

Dendrogram of similar interfaces ?

matrix format

  
  ----------------------------DG--FA--FG------------------------------WC----KT------       +-----------------------------2dtu_A    
                                                                                           ! 
  ------IT------------------------------QGQAVT--FTITSAQT--IGNGSGYGFT--VAKTLTKARGRCNC   L --3            +----------------3iay_A    
                                                                                           !        +---1 
  PIPIVIIIPGFIKGRINTNTFCDARAYT--RG--WG--------WG------------------------------------   L   +--------2   +----------------2xhb_A    
                                                                                                    ! 
  --------------------------------------RC--------------LC----SCYG--FAYA--------RG--   L            +--------------------8g9l_A

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updated Sun Aug 3 07:24:18 2025