3d1n_IK : 3D-footprint complex

structure name	STRUCTURE OF HUMAN BRN-5 TRANSCRIPTION FACTOR IN COMPLEX WITH CORTICOTROPHIN-RELEASING HORMONE GENE PROMOTER
reference	Pereira et al. J.Struct.Biol. 167 159 2009
source	Homo sapiens
experiment	X-ray (resolution=2.51, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
reference complex	3d1n_M
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3d1n_I interface=23,39,40,41,44,93,96,138,142,145, nmeeirefaknfkirrlslgltQtqvgqamtategpaySQSaiSrfeklditpksaqklkpvlekwlneaelrnqegqqnlmefvggepskkRkrRtsftpqaiealnayfeknplptgqeitemakelnydrevvrVwfsNrrQtlknt > 3d1n_K interface=23,39,40,41,44,45,93,96,137,138,145, nmeeirefaknfkirrlslgltQtqvgqamtategpaySQSaiSRfeklditpksaqklkpvlekwlneaelrnqegqqnlmefvggepskkRkrRtsftpqaiealnayfeknplptgqeitemakelnydrevvRVwfsnrrQtlknt
interface signature	QSQSSRRVNQ/QSQSSRRRRVQ

Estimated binding specificities ?

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# IC=18.926 IC/col=0.860 n_of_columns=22

specificity:

A |  96   4  96  96  82  24  84  96   0  96  24  24   0  96   0   0  24  24   9  10  82   0
C |   0   4   0   0   4  24   4   0   0   0  24  24   0   0   0   0  24  24   9   4   4   0
G |   0   6   0   0   4  24   4   0   0   0  24  24   0   0   0   0  24  24  10   9   6   0
T |   0  82   0   0   6  24   4   0  96   0  24  24  96   0  96  96  24  24  68  73   4  96

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updated Mon Sep 9 17:25:43 2024