3d1n_MO : 3D-footprint complex

structure name	STRUCTURE OF HUMAN BRN-5 TRANSCRIPTION FACTOR IN COMPLEX WITH CORTICOTROPHIN-RELEASING HORMONE GENE PROMOTER
reference	Pereira et al. J.Struct.Biol. 167 159 2009
source	Homo sapiens
experiment	X-ray (resolution=2.51, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
reference complex	3d1n_M
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3d1n_M interface=23,39,40,41,44,45,93,96,138,142,145, nmeeirefaknfkirrlslgltQtqvgqamtategpaySQSaiSRfeklditpksaqklkpvlekwlneaelrnqegqqnlmefvggepskkRkrRtsftpqaiealnayfeknplptgqeitemakelnydrevvrVwfsNrrQtlknt > 3d1n_O interface=23,39,40,41,44,45,93,96,138,142,145, nmeeirefaknfkirrlslgltQtqvgqamtategpaySQSaiSRfeklditpksaqklkpvlekwlneaelrnqegqqnlmefvggepskkRkrRtsftpqaiealnayfeknplptgqeitemakelnydrevvrVwfsNrrQtlknt
interface signature	QSQSSRRRVNQ/QSQSSRRRVNQ

Estimated binding specificities ?

readout + contact

# IC=19.717 IC/col=0.896 n_of_columns=22

specificity:

A |  84   0  84  92  93  24   6  96   0  86  24  24   1  93   0  80  24   0   0   4  86   3
C |   6   0   3   1   0  24   0   0   6   7  24  24   6   0   0   3  24   0   0   0   4   4
G |   3   0   3   0   3  24   3   0   1   3  24  24   3   3   0   0  24   0   0   0   3   3
T |   3  96   6   3   0  24  87   0  89   0  24  24  86   0  96  13  24  96  96  92   3  86

scan!

home
updated Wed Jun 24 15:26:29 2026