3d1n_MO : 3D-footprint complex

structure name	STRUCTURE OF HUMAN BRN-5 TRANSCRIPTION FACTOR IN COMPLEX WITH CORTICOTROPHIN-RELEASING HORMONE GENE PROMOTER
reference	Pereira et al. J.Struct.Biol. 167 159 2009
source	Homo sapiens
experiment	X-ray (resolution=2.51, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
reference complex	3d1n_M
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3d1n_M interface=23,39,40,41,44,45,93,96,138,142,145, nmeeirefaknfkirrlslgltQtqvgqamtategpaySQSaiSRfeklditpksaqklkpvlekwlneaelrnqegqqnlmefvggepskkRkrRtsftpqaiealnayfeknplptgqeitemakelnydrevvrVwfsNrrQtlknt > 3d1n_O interface=23,39,40,41,44,45,93,96,138,142,145, nmeeirefaknfkirrlslgltQtqvgqamtategpaySQSaiSRfeklditpksaqklkpvlekwlneaelrnqegqqnlmefvggepskkRkrRtsftpqaiealnayfeknplptgqeitemakelnydrevvrVwfsNrrQtlknt
interface signature	QSQSSRRRVNQ/QSQSSRRRVNQ

Estimated binding specificities ?

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# IC=19.427 IC/col=0.883 n_of_columns=22

specificity:

A |  85   0  88  93  89  24  23  96   0  87  24  24   4  94   0  88  24   0   0   2  85   2
C |   4   0   2   0   2  24   3   0   2   4  24  24   8   0   0   2  24   0   0   0   3   3
G |   5   0   2   0   3  24   2   0   1   2  24  24  10   2   0   2  24   0   0   1   4   2
T |   2  96   4   3   2  24  68   0  93   3  24  24  74   0  96   4  24  96  96  93   4  89

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updated Tue Jul 29 20:14:18 2025