3dfv_CD : 3D-footprint complex

structure name	ADJACENT GATA DNA BINDING
reference	Bates et al. J.Mol.Biol. 381 1292 2008
source	Mus musculus
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	4hc9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3dfv_C interface=17,19,29,33,36,37,54,56, rragtscancqtttttLwRrnangdpvcNacgLyyKLhninrpltmkkegiqtRnR > 3dfv_D interface=17,19,29,33,36,37,54,56, rragtscancqtttttLwRrnangdpvcNacgLyyKLhninrpltmkkegiqtRnR
interface signature	LRNLKLRR/LRNLKLRR

Estimated binding specificities ?

readout + contact

# IC=12.464 IC/col=0.890 n_of_columns=14

specificity:

A |   0   5  96   0  96  67  24  24  16   0   0  96   0  62
C |   0   5   0   0   0  11  24  24  64   0   0   0   0  16
G |   0  13   0   0   0  13  24  24  11   0   0   0   0  11
T |  96  73   0  96   0   5  24  24   5  96  96   0  96   7

scan!

home
updated Mon Jan 5 03:33:30 2026