3dfv_CD : 3D-footprint complex

structure name	ADJACENT GATA DNA BINDING
reference	Bates et al. J.Mol.Biol. 381 1292 2008
source	Mus musculus
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3dfx_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3dfv_C interface=17,19,29,33,36,37,54,56, rragtscancqtttttLwRrnangdpvcNacgLyyKLhninrpltmkkegiqtRnR > 3dfv_D interface=17,19,29,33,36,37,54,56, rragtscancqtttttLwRrnangdpvcNacgLyyKLhninrpltmkkegiqtRnR
interface signature	LRNLKLRR/LRNLKLRR

Estimated binding specificities ?

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# IC=11.446 IC/col=0.818 n_of_columns=14

specificity:

A |  19  90   0  96  96  24  24  24   6   0  96   0  57  96
C |  14   6   0   0   0  24  24  24  14   0   0   0  12   0
G |  12   0   0   0   0  24  24  24   6   0   0   0   6   0
T |  51   0  96   0   0  24  24  24  70  96   0  96  21   0

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updated Mon Sep 9 17:26:37 2024