3dfv_CD : 3D-footprint complex

structure name	ADJACENT GATA DNA BINDING
reference	Bates et al. J.Mol.Biol. 381 1292 2008
source	Mus musculus
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3dfx_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3dfv_C interface=17,19,29,33,36,37,54,56, rragtscancqtttttLwRrnangdpvcNacgLyyKLhninrpltmkkegiqtRnR > 3dfv_D interface=17,19,29,33,36,37,54,56, rragtscancqtttttLwRrnangdpvcNacgLyyKLhninrpltmkkegiqtRnR
interface signature	LRNLKLRR/LRNLKLRR

Estimated binding specificities ?

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# IC=12.465 IC/col=0.890 n_of_columns=14

specificity:

A |   0   5  96   0  96  67  24  24  11   0   0  96   0  67
C |   0   7   0   0   0  11  24  24  62   0   0   0   0  13
G |   0  11   0   0   0  11  24  24  12   0   0   0   0  11
T |  96  73   0  96   0   7  24  24  11  96  96   0  96   5

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updated Tue Jul 29 20:15:07 2025