3dfv_CD : 3D-footprint complex

structure name	ADJACENT GATA DNA BINDING
reference	Bates et al. J.Mol.Biol. 381 1292 2008
source	Mus musculus
experiment	X-ray (resolution=3.10, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3dfv_C interface=17,19,29,33,36,37,54,56, rragtscancqtttttLwRrnangdpvcNacgLyyKLhninrpltmkkegiqtRnR > 3dfv_D interface=17,19,29,33,36,37,54,56, rragtscancqtttttLwRrnangdpvcNacgLyyKLhninrpltmkkegiqtRnR
interface signature	LRNLKLRR/LRNLKLRR

Estimated binding specificities ?

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# IC=12.395 IC/col=0.885 n_of_columns=14

specificity:

A |   0   5  96   0  96  71  24  24  10   0   0  96   0  58
C |   0   5   0   0   0  10  24  24  58   0   0   0   0  23
G |   0  17   0   0   0  10  24  24  23   0   0   0   0  10
T |  96  69   0  96   0   5  24  24   5  96  96   0  96   5

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updated Fri Dec 13 14:40:59 2024