3eh8_G : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF Y2 I-ANII VARIANT (F13Y/S111Y)/DNA COMPLEX WITH CALCIUM (Intron-encoded DNA endonuclease I-AniI)
reference	Stoddard et al. 'Nucleic 37 877 2009
source	Emericella nidulans
experiment	X-ray (resolution=2.70, R-factor=0.201)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3eh8_G interface=18,20,22,24,27,31,35,59,61,64,66,70,72,150,152,154,156,162,164,166,168,170,192,198,200,202,204, gsdltyaylvglyegdgYfSiTkKgkYltyElgiElsikdvqliykikkilgigivsfRkRneIeMvalRiRdknhlkskilpifekypmfsnkqydylrfrnallsgiiyledlpdytrsdeplnsiesiintsyfsawlvgfieaegCfSvYkLnkdddYlIaSfDiAqrdgdilisairkylsfttkvYldktnCsKlKvTsvrsveniikflqnapvkllgnkklqyklwlkqlrkisrysekikipsny
interface signature	YSTKYEERRIMRRCSYLYISDAYCKKT

Estimated binding specificities ?

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# IC=18.591 IC/col=0.930 n_of_columns=20

specificity:

A |   6   0  96   0   0  96   0   0  11  24  24   0   0   1   0   0  24  65  76  96
C |   3   0   0   0   0   0   0   0   7  24  24   3   0  30   0   0  24  11   7   0
G |   7  96   0  96  96   0  96  96  25  24  24   0   0   0   0  96  24  13   6   0
T |  80   0   0   0   0   0   0   0  53  24  24  93  96  65  96   0  24   7   7   0

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updated Mon Dec 16 20:47:48 2024