3fyl_AB : 3D-footprint complex

structure name	GR DNA BINDING DOMAIN:CGT COMPLEX
reference	Yamamoto et al. Science 324 407 2009
source	Rattus norvegicus
experiment	X-ray (resolution=1.63, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3g9m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3fyl_A interface=25,26,30, shmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlear > 3fyl_B interface=15,25,26,30, shmclvcsdeasgcHygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearkt
interface signature	KVR/HKVR

Estimated binding specificities ?

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# IC=9.764 IC/col=0.751 n_of_columns=13

specificity:

A |   0  24  96   0  96  24  24  24  13   0   0  54   0
C |   0  24   0  96   0  24  24  24  13   0   0  13  96
G |  96  24   0   0   0  24  24  24  16  96   0  16   0
T |   0  24   0   0   0  24  24  24  54   0  96  13   0

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updated Mon Sep 9 17:33:42 2024