3g6p_AB : 3D-footprint complex

structure name	GR DNA BINDING DOMAIN:FKBP5 COMPLEX, 18BP
reference	Yamamoto et al. Science 324 407 2009
source	Rattus norvegicus
experiment	X-ray (resolution=1.99, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3g9m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3g6p_A interface=25,26,30,74, shmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnleaR > 3g6p_B interface=25,26,30,74, shmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnleaRktkkkik
interface signature	KVRR/KVRR

Estimated binding specificities ?

readout + contact

# IC=8.736 IC/col=0.582 n_of_columns=15

specificity:

A |   6  24  78   0  78  24  24  24   6   0   6  24   0  24   0
C |   0  24   6  96   6  24  24  24   6   0   6  24  90  24   0
G |  84  24   6   0   6  24  24  24   6  96   6  24   0  24  96
T |   6  24   6   0   6  24  24  24  78   0  78  24   6  24   0

scan!

home
updated Fri Dec 13 14:49:47 2024