3g6t_AB : 3D-footprint complex

structure name	GR GAMMA DNA-BINDING DOMAIN:FKBP5 16BP COMPLEX-34
reference	Yamamoto et al. Science 324 407 2009
source	Rattus norvegicus
experiment	X-ray (resolution=1.90, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3g6t_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3g6t_A interface=25,26,30, shmclvcsdeasgchygvltcgscKVffkRavegrqhnylcagrndciidkirrkncpacryrkclqagmnlearktk > 3g6t_B interface=24,25,29,54, hmclvcsdeasgchygvltcgscKVffkRavegrqhnylcagrndciidkirrKncpacryrkclqagmnle
interface signature	KVR/KVRK

Estimated binding specificities ?

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# IC=6.329 IC/col=0.575 n_of_columns=11

specificity:

A |   6  24  72   0  76  24  24  24   6   0   6
C |   0  24   6  96   6  24  24  24   6   0   6
G |  90  24  12   0   6  24  24  24   6  96   6
T |   0  24   6   0   8  24  24  24  78   0  78

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updated Fri Dec 13 14:50:18 2024