3g8u_AB : 3D-footprint complex

structure name	DNA BINDING DOMAIN:GILZ 16BP COMPLEX-5
reference	Yamamoto et al. Science 324 407 2009
source	Rattus norvegicus
experiment	X-ray (resolution=1.90, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3g9m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3g8u_A interface=25,26,30, shmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearktkkk > 3g8u_B interface=23,24,28, mclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlear
interface signature	KVR/KVR

Estimated binding specificities ?

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# IC=8.431 IC/col=0.649 n_of_columns=13

specificity:

A |   0  24  96   0   0  24  24  24  16   0  13  24   0
C |   0  24   0  96  96  24  24  24  13   0  13  24  96
G |  96  24   0   0   0  24  24  24  13  96  16  24   0
T |   0  24   0   0   0  24  24  24  54   0  54  24   0

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updated Fri Dec 13 14:50:44 2024