3g8x_AB : 3D-footprint complex

structure name	GR DNA BINDING DOMAIN:GILZ 16BP COMPLEX-65
reference	Yamamoto et al. Science 324 407 2009
source	Rattus norvegicus
experiment	X-ray (resolution=2.05, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3g9m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3g8x_A interface=24,25,29, hmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearktk > 3g8x_B interface=13,23,24,28, mclvcsdeasgcHygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearktk
interface signature	KVR/HKVR

Estimated binding specificities ?

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# IC=7.965 IC/col=0.569 n_of_columns=14

specificity:

A |   9   0  24  96   0  11  24  24  24  11   0  24  24   0
C |  11   0  24   0  96  67  24  24  24   9   0  24  24  96
G |   9  96  24   0   0   9  24  24  24   9  96  24  24   0
T |  67   0  24   0   0   9  24  24  24  67   0  24  24   0

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updated Mon Sep 9 17:35:26 2024