3g99_AB : 3D-footprint complex

structure name	GR DNA BINDING DOMAIN:PAL COMPLEX-9
reference	Yamamoto et al. Science 324 407 2009
source	Rattus norvegicus
experiment	X-ray (resolution=1.81, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3g9m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3g99_A interface=25,26,30, shmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearktkkk > 3g99_B interface=24,25,29, hmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlear
interface signature	KVR/KVR

Estimated binding specificities ?

readout + contact

# IC=2.997 IC/col=0.272 n_of_columns=11

specificity:

A |  66   3  56  23  23  26  11   5  18  23  10
C |  12  85  15  22  20  21  13   4  18  23  57
G |   9   5  14  24  25  24  16  84  22  25  11
T |   9   3  11  27  28  25  56   3  38  25  18

scan!

home
updated Mon Sep 9 17:35:41 2024