3g9j_AB : 3D-footprint complex

structure name	GR DNA BINDING DOMAIN:PAL, 18BP COMPLEX-36
reference	Yamamoto et al. Science 324 407 2009
source	Rattus norvegicus
experiment	X-ray (resolution=2.32, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3g9m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3g9j_A interface=25,26,30, shmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlear > 3g9j_B interface=25,26,30,74, shmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnleaRktkkk
interface signature	KVR/KVRR

Estimated binding specificities ?

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# IC=9.925 IC/col=0.662 n_of_columns=15

specificity:

A |   0  24  57   0  96  24  24  24   1   0   0  24   0  14  19
C |   0  24  12  96   0  24  24  24   0   0   0  24  96  12   6
G |  96  24  12   0   0  24  24  24   6  96   0  24   0  19  64
T |   0  24  15   0   0  24  24  24  89   0  96  24   0  51   7

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updated Fri Dec 13 14:51:26 2024