3g9j_AB : 3D-footprint complex

structure name	GR DNA BINDING DOMAIN:PAL, 18BP COMPLEX-36
reference	Yamamoto et al. Science 324 407 2009
source	Rattus norvegicus
experiment	X-ray (resolution=2.32, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3g9m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3g9j_A interface=25,26,30, shmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlear > 3g9j_B interface=25,26,30,74, shmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnleaRktkkk
interface signature	KVR/KVRR

Estimated binding specificities ?

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# IC=9.791 IC/col=0.653 n_of_columns=15

specificity:

A |   6  60   0  24  96   0  84  24  24  24   0   0  18  24   0
C |  60  12   0  24   0  96   6  24  24  24   0   0  18  24  96
G |  18  12  96  24   0   0   6  24  24  24   0  96   6  24   0
T |  12  12   0  24   0   0   0  24  24  24  96   0  54  24   0

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updated Mon Jan 5 03:45:28 2026