3g9m_AB : 3D-footprint complex

structure name	GR DNA-BINDING DOMAIN:SGK 16BP COMPLEX-44
reference	Yamamoto et al. Science 324 407 2009
source	Rattus norvegicus
experiment	X-ray (resolution=1.61, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3g9m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3g9m_A interface=25,26,30, shmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearktkk > 3g9m_B interface=14,24,25,29, hmclvcsdeasgcHygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearktkkk
interface signature	KVR/HKVR

Estimated binding specificities ?

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# IC=3.111 IC/col=0.239 n_of_columns=13

specificity:

A |  17  24  57   3  52  22  25  24  15   3  24  22   8
C |  10  24  13  84  15  23  21  22  13   5  28  34  64
G |  58  24  13   3  16  23  24  23  14  84  17  17  10
T |  11  24  13   6  13  28  26  27  54   4  27  23  14

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updated Fri Dec 13 14:51:34 2024