3g9m_AB : 3D-footprint complex

structure name	GR DNA-BINDING DOMAIN:SGK 16BP COMPLEX-44
reference	Yamamoto et al. Science 324 407 2009
source	Rattus norvegicus
experiment	X-ray (resolution=1.61, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3g9m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3g9m_A interface=25,26,30, shmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearktkk > 3g9m_B interface=14,24,25,29, hmclvcsdeasgcHygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearktkkk
interface signature	KVR/HKVR

Estimated binding specificities ?

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# IC=6.080 IC/col=0.468 n_of_columns=13

specificity:

A |   6  24  24   0  78  24  24  24   6   0   6  24   6
C |   6  24  24  96   6  24  24  24   6   0   6  24  78
G |  78  24  24   0   6  24  24  24   6  96   6  24   6
T |   6  24  24   0   6  24  24  24  78   0  78  24   6

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updated Mon Sep 9 17:36:03 2024