3g9o_AB : 3D-footprint complex

structure name	GR DNA-BINDING DOMAIN:SGK 16BP COMPLEX-9
reference	Yamamoto et al. Science 324 407 2009
source	Rattus norvegicus
experiment	X-ray (resolution=1.65, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3g9m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3g9o_A interface=25,26,30, shmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnleark > 3g9o_B interface=25,26,30, shmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnleark
interface signature	KVR/KVR

Estimated binding specificities ?

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# IC=6.578 IC/col=0.506 n_of_columns=13

specificity:

A |  16  24  24   0  96  24  24  24   0   0  11  15   5
C |  10  24  24  96   0  24  24  24   0   0  20  30  70
G |  55  24  24   0   0  24  24  24   0  96  10   5  16
T |  15  24  24   0   0  24  24  24  96   0  55  46   5

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updated Mon Sep 9 17:36:09 2024