3ikt_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A REX-FAMILY REPRESSOR/DNA/NAD+ COMPLEX FROM THERMUS AQUATICUS
reference	McLaughlin et al. Mol.Cell 38 563 2010
source	Thermus thermophilus HB27
experiment	X-ray (resolution=2.26, R-factor=?)
structural superfamily	NADP-binding Rossmann-fold domains;"Winged helix" DNA-binding domain;
reference complex	3ikt_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3ikt_A interface=44,45,47,48,51,52, gmkvpeaaisrlitylrileeleaqgvhrtsseqlgelaqvtaFQvRKdlSYfgsygtgytvpvlkrelrhilglnrkwglcivgmgrlgsaladypgfgesfelrgffdvdpekvgrpvrggviehvdllpqrvpgrieialltvpreaaqkaadllvaagikgilnfapvvlevpkevavenvdflagltrlsfailnpkwr > 3ikt_B interface=43,44,46,47,50,51,58, mkvpeaaisrlitylrileeleaqgvhrtsseqlgelaqvtaFQvRKdlSYfgsygtRgvgytvpvlkrelrhilglnrkwglcivgmgrlgsaladypgfgesfelrgffdvdpekvgrpvrggviehvdllpqrvpgrieialltvpreaaqkaadllvaagikgilnfapvvlevpkevavenvdflagltrlsfailnpkwr
interface signature	FQRKSY/FQRKSYR

Estimated binding specificities ?

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# IC=12.213 IC/col=0.678 n_of_columns=18

specificity:

A |  12   4   5   0   0   0  87  24  24  24  24  24  24   1   0  92   0  87
C |  16  66   4   0   0   0   4  24  24  24  24  24  24  12  96   4  96   1
G |  64  16   4  96   0  96   1  24  24  24  24  24  24   4   0   0   0   4
T |   4  10  83   0  96   0   4  24  24  24  24  24  24  79   0   0   0   4

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updated Fri Dec 13 15:22:05 2024