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structure nameCRYSTAL STRUCTURE OF A Z-Z JUNCTION (WITH HEPES INTERCALATING)
(Double-stranded RNA-specific adenosine deaminase)
referenceAthanasiadis et al. Proc.Natl.Acad.Sci.USA 107 9088 2010
sourceHomo sapiens
experimentX-ray (resolution=2.65, R-factor=0.229)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyAdenosine deaminase zalpha domain;
multimeric complexes2acj_BCD 3f23_AB 3irq_AD 3irr_AB 3irr_CD 5zu1_BC 5zuo_BCD 5zup_BCD
redundant complexes5zuo 5zup 5zu1 3irq
reference complex1qbj_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  ----------ST--STQAQGST--SART--------------------KT--------   L                +-----------------------5trd_B    
                                                                                !  
  --------------TT--PTTC--STNT--------------------RT--------   L                !                         +4lln_I    
                                                                                !                    +----2 
  --------------DCSA--TA--TT--------RT------------RA--------   L                !                +---7    +1z9c_A    
                                                                                !                !   ! 
  ----------------RGSTRT--STHG--------------------RA--------   L                !             +-11   +-----3zpl_B    
                                                                                !             !  !  
  ----------TT------KATT--QTTG----LTRT----KA----------FTYT--   L                !             !  !    +----2p7c_B    
                                                                                !             !  +----6 
  ----------------SANCTG--TTPT--------------------RT--------   L            +--15             !       +----5hlg_E    
                                                                            !   !          +-12  
  --------------STKTPTTT--FT----------------------RA--------   L            !   !          !  !    +--------4aso_F    
                                                                            !   !          !  !  +-9 
  --------------------------------YG------------------------                !   !          !  !  ! !       +4lb5_B    
                                                                            !   !  +------13  +-10 +-------1 
  --------------STPTATAT--TTKG------------------------------   L            !   !  !       !     !         +5yi2_J    
                                                                            !   !  !       !     !  
  --------------QTPTPG--TTRG----------------------HT--------   L            !   !  !       !     +---------5xxp_A    
                                                                            !   !  !       !  
  ------------------KGTA----TA------RG----------------------   L         +-16   +-14       +--------------1xsd_A    
                                                                         !  !      !  
  --------------------------------HT--ST--------------------   L         !  !      !                   +--6akp_C    
                                                                         !  !      !             +-----5 
  --------------------------NA----HT--STLT------------------   L         !  !      !             !     ! +2a07_K    
                                                                         !  !      +-------------8     +-4 
  ------------------------NAST--RGHT--ST--------------------   L         !  !                    !       +6nce_A    
                                                                      +-17  !                    ! 
  ------KAFA--------------------------------YANAKTFGMC------          !  !  !                    +--------3aaf_B    
                                                                      !  !  !  
  ------------RGSTRGMCTT--RT--------------------------------   L      !  !  !                          +4u0y_B    
                                                                   +-18  !  +--------------------------3 
  --------------TTLTECTA--STRG------------------------------   L   !  !  !                             +4i2o_B    
                                                                   !  !  !  
  ------------------HT----RTITYT----------------------------   L -19  !  +----------------------------4kfc_B    
                                                                   !  !  
  LAHAKARA----------------------------------------------IAVA       !  +----------------------------6dta_A    
                                                                   !  
  ------------------NTVC--ECSTYT--STYC--------RA------------   L   +----------------------------5ed4_A    
                                                                 

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updated Thu Sep 12 17:21:18 2024