3jra_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27BP NON CONSENSUS SEQUENCE DNA F6
reference	Johnson et al. 'Genes 24 814 2010
source	Escherichia coli
experiment	X-ray (resolution=3.11, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3jra_A interface=68,77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn > 3jra_B interface=75,84,85,87,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn
interface signature	TNRTR/TNRTR

Estimated binding specificities ?

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# IC=9.637 IC/col=0.567 n_of_columns=17

specificity:

A |   0   0  16  24   5  96  24  24  24  24  24   0  62  24  12   0  96
C |   0   0  11  24  79   0  24  24  24  24  24   0  11  24  62   0   0
G |   0  96  56  24   5   0  24  24  24  24  24   0  12  24  11   0   0
T |  96   0  13  24   7   0  24  24  24  24  24  96  11  24  11  96   0

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updated Tue Jul 29 21:02:35 2025