3jrc_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27 BP DNA F29 CONTAINING 5 G/CS AT CENTER
reference	Johnson et al. 'Genes 24 814 2010
source	Escherichia coli
experiment	X-ray (resolution=3.08, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3jrc_A interface=68,77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn > 3jrc_B interface=75,84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn
interface signature	TNRTR/TNRR

Estimated binding specificities ?

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# IC=8.236 IC/col=0.484 n_of_columns=17

specificity:

A |   0   0  10  24   6  69  24  24  24  24  24  10  90  24  24   0  96
C |   0   0  66  24  16   7  24  24  24  24  24  66   0  24  24  96   0
G |   0  96  10  24  69  10  24  24  24  24  24  10   5  24  24   0   0
T |  96   0  10  24   5  10  24  24  24  24  24  10   1  24  24   0   0

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updated Mon Sep 9 18:11:25 2024