3jre_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27 BP DNA F26 CONTAINING A-TRACT AT CENTER
reference	Johnson et al. 'Genes 24 814 2010
source	Escherichia coli
experiment	X-ray (resolution=3.17, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3jre_A interface=68,77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn > 3jre_B interface=75,84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn
interface signature	TNRTR/TNRR

Estimated binding specificities ?

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# IC=10.077 IC/col=0.593 n_of_columns=17

specificity:

A |   0   0   6  24   6  96  24  24  24  24  24   6  78  24  78   0  96
C |   0   0  78  24  78   0  24  24  24  24  24  78   6  24   6  96   0
G |   0  96   6  24   6   0  24  24  24  24  24   6   6  24   6   0   0
T |  96   0   6  24   6   0  24  24  24  24  24   6   6  24   6   0   0

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updated Mon Sep 9 18:11:51 2024