3jre_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27 BP DNA F26 CONTAINING A-TRACT AT CENTER
reference	Johnson et al. 'Genes 24 814 2010
source	Escherichia coli
experiment	X-ray (resolution=3.17, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3jre_A interface=68,77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn > 3jre_B interface=75,84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn
interface signature	TNRTR/TNRR

Estimated binding specificities ?

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# IC=9.712 IC/col=0.571 n_of_columns=17

specificity:

A |   5   0   0  24   5   5  24  24  24  24  24   0  10  24   6   0  96
C |   6   0   5  24  10   6  24  24  24  24  24   0   5  24   0  96   0
G |   5  96   5  24  10  80  24  24  24  24  24   0  70  24  85   0   0
T |  80   0  86  24  71   5  24  24  24  24  24  96  11  24   5   0   0

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updated Fri Dec 13 15:30:48 2024