3jrf_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27 BP DNA F27 CONTAINING A C/G AT CENTER
reference	Johnson et al. 'Genes 24 814 2010
source	Escherichia coli
experiment	X-ray (resolution=3.05, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3jrf_A interface=68,77,78,80,83, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlrKklkkygmn > 3jrf_B interface=75,84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn
interface signature	TNRTK/TNRR

Estimated binding specificities ?

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# IC=9.606 IC/col=0.565 n_of_columns=17

specificity:

A |   4   0   0  24   4  83  24  24  24  24  24   4  12  24  70   0  91
C |   4   0  96  24  12   5  24  24  24  24  24  88   4  24  12  96   0
G |   5  96   0  24  76   4  24  24  24  24  24   0   5  24  10   0   0
T |  83   0   0  24   4   4  24  24  24  24  24   4  75  24   4   0   5

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updated Mon Sep 9 18:12:03 2024