3jrf_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27 BP DNA F27 CONTAINING A C/G AT CENTER
reference	Johnson et al. 'Genes 24 814 2010
source	Escherichia coli
experiment	X-ray (resolution=3.05, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3jrf_A interface=68,77,78,80,83, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlrKklkkygmn > 3jrf_B interface=75,84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn
interface signature	TNRTK/TNRR

Estimated binding specificities ?

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# IC=9.527 IC/col=0.560 n_of_columns=17

specificity:

A |   3   0   6  24  76   3  24  24  24  24  24   6   6  24   0   0  84
C |   6   0   3  24   3   3  24  24  24  24  24   3  76  24   0  96   6
G |   3  96  11  24   3  87  24  24  24  24  24   3  11  24  96   0   3
T |  84   0  76  24  14   3  24  24  24  24  24  84   3  24   0   0   3

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updated Fri Dec 13 15:31:00 2024