3jrg_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27 BP NON CONSENSUS SEQUENCE DNA F18
reference	Johnson et al. 'Genes 24 814 2010
source	Escherichia coli
experiment	X-ray (resolution=3.11, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3jrg_A interface=68,77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn > 3jrg_B interface=75,84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn
interface signature	TNRTR/TNRR

Estimated binding specificities ?

contact

# IC=10.397 IC/col=0.612 n_of_columns=17

specificity:

A |   0   0   0  24   0   8  24  24  24  24  24   8   8  24   8   0  96
C |   0   0   0  24   8   8  24  24  24  24  24   8  88  24   8  96   0
G |   0  96   0  24  88  72  24  24  24  24  24   8   0  24  72   0   0
T |  96   0  96  24   0   8  24  24  24  24  24  72   0  24   8   0   0

scan!

home
updated Tue Jul 29 21:04:04 2025