3jrh_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27 BP NON CONSENSUS SEQUENCE DNA F21
reference	Johnson et al. 'Genes 24 814 2010
source	Escherichia coli
experiment	X-ray (resolution=2.88, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3jrh_A interface=68,77,78,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn > 3jrh_B interface=75,84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn
interface signature	TNRR/TNRR

Estimated binding specificities ?

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# IC=9.313 IC/col=0.548 n_of_columns=17

specificity:

A |   0   0   0  24   0  20  24  24  24  24  24  20   0  24  90   0  90
C |   0   0  62  24  75  55  24  24  24  24  24   7   0  24   6  96   0
G |   0  96  14  24   0   7  24  24  24  24  24  52   0  24   0   0   4
T |  96   0  20  24  21  14  24  24  24  24  24  17  96  24   0   0   2

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updated Mon Sep 9 18:12:26 2024