3jrh_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27 BP NON CONSENSUS SEQUENCE DNA F21
reference	Johnson et al. 'Genes 24 814 2010
source	Escherichia coli
experiment	X-ray (resolution=2.88, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3jrh_A interface=68,77,78,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn > 3jrh_B interface=75,84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn
interface signature	TNRR/TNRR

Estimated binding specificities ?

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# IC=9.079 IC/col=0.534 n_of_columns=17

specificity:

A |   3   0  11  24  83   0  24  24  24  24  24  11  18  24  13   0  96
C |   0   0   8  24   0  81  24  24  24  24  24  14   0  24  14  96   0
G |   0  96   0  24   2   1  24  24  24  24  24  57  78  24  55   0   0
T |  93   0  77  24  11  14  24  24  24  24  24  14   0  24  14   0   0

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updated Fri Dec 13 15:31:25 2024