3jri_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27 BP NON CONSENSUS SEQUENCE DNA F23
reference	Johnson et al. 'Genes 24 814 2010
source	Escherichia coli
experiment	X-ray (resolution=3.11, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3jri_A interface=68,77,78,82,83, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRKklkkygmn > 3jri_B interface=75,84,85,89,90, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRKklkkygmn
interface signature	TNRRK/TNRRK

Estimated binding specificities ?

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# IC=6.183 IC/col=0.364 n_of_columns=17

specificity:

A |   6   0  24  24  70  24  24  24  24  24  24  24   6  24   6   0  76
C |   6   0  24  24  12  24  24  24  24  24  24  24  78  24   0  96   6
G |   8  96  24  24   6  24  24  24  24  24  24  24   6  24  89   0   6
T |  76   0  24  24   8  24  24  24  24  24  24  24   6  24   1   0   8

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updated Fri Dec 13 15:31:38 2024